21. Burkle, L and RT Jones. In Review. Bee-host species and bee foraging patterns explain compositional differences in bee microbial communities. Apidologie.
20. Brookshire, ENJ, S Gerber, W Greene, RT Jones, and SA Thomas. 2017. Global bounds on nitrogen gas emissions from humid tropical forests. Geophysical Research Letters. 44(5): 2502-2510. Link
19. Du, Z, D Riveros-Iregui, R Jones, T McDermott, J Dore, B McGlynn, R Emanuel, and X Li. 2015. Landscape position influences microbial composition and function via redistribution of soil water across a watershed. Applied and Environmental Microbiology. 81(24): 8457-8468. Link
18. Jones, RT, J Borchert, R Eisen, K MacMillan, KA Boegler, and KL Gage. 2015. Flea-associated bacterial communities across an environmental transect in a plague-endemic region of Uganda. PLoS ONE. 10(10): e0141057. Link
17. Peipoch, M, R Jones, and HM Valett. 2015. Spatial patterns in biofilm diversity across hierarchical levels of river-floodplain landscapes. PLoS ONE. 10(12): e0144303. Link
16. Jones, RT. 2015. Comprehensive survey of soil Rhizobiales diversity using high-throughput DNA sequencing. In: Biological Nitrogen Fixation. Edited by: Frans J. de Bruijn.
15.Jones RT, SM Vetter, KG Gage. 2013. Exposing laboratory-reared fleas to soil and wild flea feces increases transmission of Yersinia pestis. American Journal of Tropical Medicine and Hygiene. 89(4): 784-787. Link
14. Jones RT, LG Sanchez, N Fierer. 2013. A cross-taxon analysis of insect-associated bacterial diversity. PLoS ONE. 8(4): e61218.Link
13. Monson RK, RT Jones, TN Rosenstiel, JP Schnitzler. 2013. Why only some plants emit isoprene. Plant, Cell, and Environment. 306(3): 503-516. Link
12. Jones RT, SM Vetter, J Montenieiri, J Holmes, SA Bernhardt, KL Gage. 2013. Yersinia pestis infection and laboratory conditions alter flea-associated bacterial communities. The ISME Journal. 7:224-228. Link
11.Jones RT, SA Bernhardt, AP Martin, KL Gage. 2012. Interactions among symbionts of Oropsylla spp. (Siphonoptera: Ceratophyllidae). Journal of Medical Entomology. 49(3): 492-496. Link
10. Sackett LC, TB Cross, RT Jones, WC Johnson, K Ballare, C Ray, SK Collinge, AP Martin. 2012. Connectivity of prairie dog colonies in an altered landscape: inferences from analysis of microsatellite DNA variation. Conservation Genetics. 13(2): 407-418. Link
9. Jones RT, A Bressan, AM Greenwell, N Fierer. 2012. Bacterial communities of two parthenogenetic aphid species cocolonizing two host plants across the Hawaiian Islands. Applied and Environmental Microbiology. 77(23): 8345-8349.Link
8. Brinkerhoff R, AP Martin, RT Jones, SK Collinge. 2011. Population genetic structure of the prairie dog flea and plague vector, Oropsylla hirsuta. Parasitology. 138(1): 71-79.Link
7. Jones RT, R Knight, AP Martin. 2010. Bacterial communities of disease vectors sampled across time, space, and species. The ISME Journal. 4(2): 223-231.Link
6. Jones RT, MS Robeson, CL Lauber, M Hamady, R Knight, N Fierer. 2009. A comprehensive survey of soil acidobacterial diversity using pyrosequencing and clone library analyses. The ISME Journal. 3(4): 442-453.Link
5. Jones RT, KF McCormick, AP Martin. 2008. Bacterial communities of Bartonella-positive fleas: diversity and community assembly patterns. Applied and Environmental Microbiology. 74(5): 1667-1670. Link
4. Fierer N, M Breitbart, J Nulton, P Salamon, C Lozupone, R Jones, M Robeson, RA Edwards, B Felts, S Rayhawk, R Knight, F Rohwer, RB Jackson. 2007. Metagenomic and small-subunit rRNA analyses reveal the genetic diversity of bacteria, archaea, fungi, and viruses in soil. Applied and Environmental Microbiology. 73(21): 7059-7066.Link
3. Jones RT, EK Costello, AP Martin. 2007. Application of phylogenetic techniques in studies of soil microbial communities. Manual of Environmental Microbiology (v3). ASM Press. 608-617.
2. Jones RT and AP Martin. 2006. Testing for differentiation of microbial communities using phylogenetic methods: accounting for uncertainty of phylogenetic inference and character state mapping. Microbial Ecology. 52(3): 408-417. Link
1. Jones RT, AP Martin, AJ Mitchell, SK Collinge, C Ray. 2005. Characterization of 14 polymorphic microsatellite markers for the black-tailed prairie dog (Cynomys ludovicianus). Molecular Ecology Notes. 5(1): 71-73.Link
